payroll issues (taxes paid to different state)


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My employer filed my LCA from MO (client location), employer location is VA.


I work at client location - MO. My employer is processing my payroll from VA state, taxes paid to VA.  I asked him to run my payroll from MO as I work at client location. But no action has been taken by my employer. 


I also asked him to re-process my recent (3 months) pay stubs from MO state. No action taken yet.


I am going to H1B visa stamping in March '14. I have below questions, please assist.


1) Can my employer re-process the payroll ? 
2) Is employer change only option left to me ? In this case I need to wait for another 3-6 months and plan for visa stamping accordingly (with new pay stubs)




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